Chromosomes
Bioinformatics- Human mutation resources/databases |
- HGMD - Human Gene Mutation db
- SVD - EBI Sequence variation db
- HGBASE - Human Genic Bi-Allelic Sequences db
- GeneDis - Human genetic disease db
- The SNP consortium
- dbSNP - Human single nucleotide polymorphism (SNP) db
- ALFRED - Allele Frequency Db
- SeattleSNPs - UW-FHCRC Variation Discovery Resource
- PicSNP - Catalog of non-synonymous SNP
- List of mutation databases from OMIM
- List of mutation databases from IMT (Finland)
- ADAbase - Human adenosine deaminase (ADA) mutation db
- ADB - Albinism db (Mutations in human genes causing albinism)
- Albumin Web site
- Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II)
- APC mutation
- AR mutations - Human androgen receptor mutation db
- Antithrombin mutation db
- Asthma and Allergy gene db
- BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies
- BLMbase - Human BLM mutation db (Bloom syndrome)
- BTKbase - Human BTK mutation db (X-linked agammaglobulinemia)
- CD3Ebase - Human CD3E mutation db
- CD3Gbase - Human CD3G mutation db
- CD40Lbase - Human CD40 ligand mutation db
- COL1/3 mutation - Human Type I and III collagen mutation db
- Connexin-deafness - Human connexins mutation db
- CFTR mutation - Human cystic fibrosis mutation db (CFTR)
- EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy)
- KMeyeDB - Eye disease genes db
- FVII mutation - Human Factor VII mutation db
- HAMSTeRS - Human Factor VIII mutation db (Haemophilia A)
- HAeMB - Human Factor IX mutation db (Haemophilia B)
- FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome)
- G6PD - Human G6PD deficiency resource
- G6PDdb - Human G6PD mutation db
- Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia)
- GNAS1 - Human GNAS1 mutation db
- GM2 gangliosidoses - Human Hexosaminidase A (HEXA), B (HEXB) and GM2A mutation db (Tay-Sachs/Sandhoff diseases)
- HbVar - Hemoglobin variants db
- Hereditary hearing loss homepage
- IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID)
- L1CAM mutation - Human L1CAM mutation db
- LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia)
- LHR - Human luteinizing hormone (LH) receptor mutation db
- LQTSdb - Long QT syndrome db
- NCF1base - Human NCF1 mutation db
- NCF2base - Human NCF2 mutation db
- Neuromuscular diseases web site
- NCL - Neuronal Ceroid Lipofuscinoses mutation db
- NF1 - NF1 Genetic Mutation Analysis Consortium web site
- OCRL1 - OCRL1 mutation db (Lowe Syndrome)
- OTCase - Human ornithine transcarbamylase (OTCase) website
- Cytochrome P450 alleles nomenclature
- p53 mutation db - University of Tokyo p53 mutation db
- Germline p53 mutation db - University of Prague db of germline p53 mutations
- PAHdb - Human phenylalanine hydroxylase (PAH) mutation db
- PAX2 mutation - Human PAX2 mutation db
- PAX6 mutation - Human PAX6 mutation db
- Prion - Prion and prion disease web site
- RAG1base - Human RAG1 mutation db
- RAG2base - Human RAG2 mutation db
- RB1base - Human retinoblastoma-associated protein (RB) mutation db
- RetNet - Retinal Information Network
- Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases
- Alsod.org - ALS/SOD1 genetic mutations db
- TSC - TSC (TSC1/TSC2) variation db
- TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin; TSC2)
- TGDB - Tumor gene db
- VMD2 mutation - Human VMD2 mutation db
- vWF mutation - Human von Willebrand factor (vWF) mutation db
- WRN - Human WRN mutation db (Warner disease)
- WT1 mutation - Human WT1 mutation db
- X-ALD mutation - Human ABCD1 mutation db
Vertebrates |
Inveretbrates |
Insects |
Plants |
- NAL - AGIS - Access to many plant genome databases at the National Agricultural Library
- Mendel - Plant gene nomenclature database from CPGN
ARS Genome Database Resource is primarily a site for communication of Plant Genome data among scientists worldwide. The medium is a set of genome databases, similar to the ones for Human genome mapping and sequencing. They include data about plant genes, chromosome maps, DNA fingerprints, beneficial traits, and crop varieties that possess those traits. -
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TAIR - The Arabidopsis Information Resource
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MATDB - MIPS Arabidopsis thaliana db
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TIGR At - TIGR Arabidopsis thaliana db
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AMPL - Arabidopsis Membrane Protein Library
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Gramene - A comparative mapping resource for grains
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RGP - Rice Genome Research Program
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ChlamyDB - Chlamydomonas reinhardtii genome db
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Mendel Bioinformatics Group , UK
Mendel-ESTS , contains all of the plant EST and STS sequences currently in dbEST and dbSTS (>94,000) related to the sequences, grouped by gene family, in the Gene Family Database .
Mendel-GFDb Database of Genes Organized by Families. Now with Pfam, Prosite & TRANSFAC domain information
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Mendel-CPGN : developinging a common nomenclature for sequenced plant genes
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Plant Chromatin Database
Database for chromatin proteins in plants, including functions and molecular phylogenetic relationships, with initial emphasis on Arabidopsis and maize
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ZmDB Maize Genome Database
Goals include discovering maize genes using EST sequencing and engineered Mu (RescueMu) tagging, and developing new tools to facilitate gene mapping and phenotypic analysis.
Fungi |
Bacteria |
Viruses & Phages |
Mitochondrian & Chloroplast |
- GOBASE - Organelle Genome Database
- MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes)
- MITOMAP - Human mitochondrial genome db
- MmtDB - Metazoa mitochondrial DNA variants db
- MitBASE - Integrated mitochondrial DNA db
- MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis
- HvrBase - Primates mtDNA control region sequences compilation
- MOUSE - Mitochondrial and Other Useful SEquences (human and apes mit. DNA db)
- C.caldarium - Cyanidium caldarium strain RK1 chloroplast genome
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